The University of Wisconsin Collaborative Genomics Core offers the following tests, organized by method.

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Chromosome Analysis 

Test Name Lab Order Codes Performing Site Requisition Form 
Chromosome Analysis, Amniotic Fluid, for Genetic Diagnosis 850 WSLH Open requisition form (pdf)
Chromosome Analysis, Blood, Abridged Examination for Familial Chromosome Rearrangements 803 WSLH Open requisition form (pdf)
Chromosome Analysis, Blood, for Genetic Diagnosis 801 WSLH Open requisition form (pdf)
Chromosome Analysis, Bone Marrow, for Hematologic Disorders 812 WSLH Open requisition form (pdf)
Chromosome Analysis, Chorionic Villus Sampling, for Genetic Diagnosis 855 WSLH Open requisition form (pdf)
Chromosome Analysis, Products of Conception/Tissue Biopsy, for Genetic Diagnosis 831 WSLH Open requisition form (pdf)
Chromosome Analysis, Tumor/Pleural Effusion/Ascites fluid, for Neoplastic Disorders 836 WSLH Open requisition form (pdf)
Chromosome Analysis, Unstimulated Blood, for Hematologic Disorders 811 WSLH Open requisition form (pdf)
Molecular Analysis, Fragile X, Genetic Diagnosis 828 WSLH Open requisition form (pdf)
Tissue Culture and Shipment 860 WSLH Open requisition form (pdf)

 

Fluorescence In Situ Hybridization

Test Name Lab Order Codes Performing Site Web Link 
11q22 deletion/duplication, FISH, ATM gene 870F40 WSLH Open requisition form (pdf)
ALK Rearrangement, FISH 882F87 WSLH Open requisition form (pdf)
API2/MALT Fusion, t(11;18)(q21;q21), FISH 881F60 WSLH Open requisition form (pdf)
BCL6 Rearrangement, FISH 882F88 WSLH Open requisition form (pdf)
BCR/ABL Fusion, t(9;22)(q34;q11.2), FISH 881F61 WSLH Open requisition form (pdf)
BCR/ABL,ASS Tri-color Fusion, t(9;22)(q34;q11.2), FISH 881F71 WSLH Open requisition form (pdf)
CBFB Rearrangement, inv(16)(p13.1q22), FISH 882F80 WSLH Open requisition form (pdf)
CCND1/IgH Fusion, t(11;14)(q13;q32), FISH 881F62 WSLH Open requisition form (pdf)
Deletion 13q14, FISH, D13S319 870F43 WSLH Open requisition form (pdf)
Deletion 17p13.1, FISH, TP53 870F47 WSLH Open requisition form (pdf)
Deletion 19q13, FISH, for Glial neoplasia 886F6 WSLH Open requisition form (pdf)
Deletion 1p36, FISH, for Glial neoplasia 886F5 WSLH Open requisition form (pdf)
Deletion 20q, FISH, D20S108 870F44 WSLH Open requisition form (pdf)
Deletion 5q31, FISH, EGR1 870F45 WSLH Open requisition form (pdf)
Deletion 7q31, FISH, D7S522 870F42 WSLH Open requisition form (pdf)
Deletion 9p21, FISH, P16 870F46 WSLH Open requisition form (pdf)
DiGeorge/Velo-cardio-facial/Shprintzen/Conotruncal anomaly syndrome, Deletion 22q11.2, TUPLE1, FISH, for Genetic Diagnosis 871F28 WSLH Open requisition form (pdf)
ETV6/RUNX1 Fusion, t(12;21)(p13;q22), FISH 881F67 WSLH Open requisition form (pdf)
EWSR1 Rearrangement, FISH 882F81 WSLH Open requisition form (pdf)
FGFR1 Rearrangement, 8p11 myeloproliferative syndrome , FISH 882F93 WSLH Open requisition form (pdf)
FGFR3/IgH Fusion, t(4;14)(p16;q32), FISH 881F69 WSLH Open requisition form (pdf)
FIP1L1-CHIC2-PDGFRα Rearrangement, 4q12, FISH 882F89 WSLH Open requisition form (pdf)
HER2 Gene Amplification status, FISH 883 WSLH Open requisition form (pdf)
IgH Rearrangement, FISH 882F82 WSLH Open requisition form (pdf)
IgH/BCL2 Fusion, t(14;18)(q32;q21), FISH 881F64 WSLH Open requisition form (pdf)
IgH/MAF Fusion, t(14;16)(q32;q23), FISH 881F70 WSLH Open requisition form (pdf)
IgH/MALT1 Fusion, t(14;18)(q32;q21), FISH 881F68 WSLH Open requisition form (pdf)
MALT1 Rearrangement, FISH 882F83 WSLH Open requisition form (pdf)
MLL Rearrangement, FISH 882F84 WSLH Open requisition form (pdf)
MYC Rearrangement, FISH 882F85 WSLH Open requisition form (pdf)
MYC/IgH Fusion, t(8;14)(q24;q32), FISH 881F65 WSLH Open requisition form (pdf)
PDGFRβ Rearrangement, 5q33, FISH 882F90 WSLH Open requisition form (pdf)
PML/RARA Fusion, t(15;17)(q22;q21), FISH 881F66 WSLH Open requisition form (pdf)
Prader-Willi syndrome, Deletion 15q11.2, SNRPN, FISH 871F30 WSLH Open requisition form (pdf)
Prenatal Panel, AF and CVS 873 WSLH Open requisition form (pdf)
RARA Rearrangement, 17q21, FISH 882F92 WSLH Open requisition form (pdf)
RUNX1T1/RUNX1 Fusion, t(8;21)(q22;q22), FISH 881F63 WSLH Open requisition form (pdf)
SRY, Yp11.3 871F34 WSLH Open requisition form (pdf)
Stillbirth Aneuploidy Panel, FISH, Paraffin embedded fetal tissue 875 WSLH Open requisition form (pdf)
SYT Rearrangement, FISH 882F86 WSLH Open requisition form (pdf)
T-cell Receptor alpha/delta Rearrangement, 14q11.2, FISH 882F91 WSLH Open requisition form (pdf)
Trisomy 10, FISH, CEP10 870F49 WSLH Open requisition form (pdf)
Trisomy 12, FISH, D12Z3 870F51 WSLH Open requisition form (pdf)
Trisomy 17, FISH, D17Z1 870F50 WSLH Open requisition form (pdf)
Trisomy 4, FISH, CEP4 870F48 WSLH Open requisition form (pdf)
Trisomy 8, FISH, D8Z2 870F41 WSLH Open requisition form (pdf)
X and Y chromosomes, FISH, DXZ1/DYZ3 870F52 WSLH Open requisition form (pdf)

 

Array Testing 

Test Name Lab Order Codes Performing Site Web Link 
Prenatal- Whole Genome Array Comparative Genomic Hybridization, Comprehensive (850K SNP-aCGH) 890PREC WSLH/UWBC Open requisition form (pdf)
Prenatal - Whole Genome Array Comparative Genomic Hybridization, Targeted (850K SNP-aCGH) 890PRET WSLH/UWBC Open requisition form (pdf)
Whole Genome Array Comparative Genomic Hybridization, (850K SNP-aCGH) 890 WSLH/UWBC Open requisition form (pdf)

 
Molecular Studies 

Test Name Lab Order Codes Performing Site Web Link 
Array Family Studies 890FAM WSLH Open requisition form (pdf)
BCR/ABL Fusion Transcript, t(9;22)(q34;q11.2), (Maj) Quantitative RT-PCR 893M51 WSLH Open requisition form (pdf)
BCR/ABL Fusion Transcript, t(9;22)(q34;q11.2), (min) Quantitative RT-PCR 893M52  WSLH  Open requisition form (pdf)
BCR/ABL Fusion Transcript, t(9;22)(q34;q11.2), RT-PCR 887M31 WSLH Open requisition form (pdf)
B-Cell Clonality (IGH and IGK)   UWHC Open requisition form (pdf)
Calreticulin (exon 9) by PCR CALR UWHC Open requisition form (pdf)
Cancer Mutation panel- targeted regions of 50 genes CANPNL UWHC Open requisition form (pdf)
CEBPA Mutation Analysis 895M62 WSLH Open requisition form (pdf)
DNA extraction for future testing (1yr retention) 868 WSLH Open requisition form (pdf)
EGFR Polymorphism Analysis EGFR-M UWHC Open requisition form (pdf)
Factor V Genotyping FVPCR UWHC Open requisition form (pdf)
FISH Array Confirmation- Family Studies 871 WSLH Open requisition form (pdf)
FLT3 Mutation Analysis 895M60 WSLH Open requisition form (pdf)
Hereditary Hemochromatosis HHPCR UWHC Open requisition form (pdf)
IDH1/IDH2 Mutation Analysis   UWHC Open requisition form (pdf)
IL28b Genotyping IL28B UWHC Open requisition form (pdf)
KIT (C-KIT) Mutation Analysis 895M63 WSLH Open requisition form (pdf)
KRAS Polymorphism Analysis KRAS-M UWHC Open requisition form (pdf)
Lung Cancer Mutation Panel (BRAF, KRAS, EGFR, ERBB2)   UWHC Open requisition form (pdf)
Methylation Specific PCR, SNRPN gene, 15q 889 WSLH Open requisition form (pdf)
Microsatellite Instability MSI-M UWHC Open requisition form (pdf)
NPM1 Mutation Analysis 895M61 WSLH Open requisition form (pdf)
PML/RARA Fusion Transcript, t(15;17)(q22;q21), RT-PCR 887M35 WSLH Open requisition form (pdf)
Prothrombin Gene Mutation PTPCR UWHC Open requisition form (pdf)
QPCR Array Confirmation-Family Studies 893M53 WSLH/PG Open requisition form (pdf)
Qualitative BRAF V600E BRAF-M UWHC Open requisition form (pdf)
Quantitative JAK2 V617F (Blood/Bone Marrow Aspirate) JAK2MD UWHC Open requisition form (pdf)
RAS/RAF Targeted Gene Mutation Panel (BRAF, KRAS, HRAS, NRAS)   UWHC Open requisition form (pdf)
RAS/RAF/PIK Targeted Gene Mutation Panel (BRAF, KRAS, NRAS, PIK3CA)   UWHC Open requisition form (pdf)
STR ENGRAFTMENT SEPERATED LINEAGES (CD3 and CD33) STRSEP UWHC Open requisition form (pdf)
STR ENGRAFTMENT UNSEPARATED LINEAGES, BONE STREBM UWHC Open requisition form (pdf)
STR ENGRAFTMENT UNSEPARATED LINEAGES, WHOLE BLOOD STREWB UWHC Open requisition form (pdf)
Targeted Variant Analysis via Sanger DNA Sequencing 895M50 WSLH Open requisition form (pdf)
T-Cell Clonality - Gamma with Reflex to Beta   UWHC Open requisition form (pdf)
Exome Sequencing Analysis with Mitochondrial Analysis 895M40  WSLH

Open requisition, consent and family history form (pdf)

 

Infectious Disease 

Test Name Lab Order Codes Performing Site Web Link 
HCV Genotyping HCVGEN UWHC Open requisition form (pdf)
Quantitative HCV by PCR HCVRNA UWHC Open requisition form (pdf)
Quantitative HIV-1 by PCR HIVRNA UWHC Open requisition form (pdf)
Qualitative CMV
Qualitative CMV by PCR - BAL CMVBAL UWHC Open requisition form (pdf)
Quantitative CMV by PCR - Blood CMVDNA UWHC Open requisition form (pdf)
Qualitative CMV by PCR - Body Fluid CMVBF UWHC Open requisition form (pdf)
Qualitative CMV by PCR - CSF CMVCF UWHC Open requisition form (pdf)
Qualitative CMV by PCR - Tissue CMVT UWHC Open requisition form (pdf)
Quantitative BK
Quantitative HBV by PCR HBVDNA UWHC Open requisition form (pdf)
Qualitative HSV I and II by PCR HSVPCR UWHC Open requisition form (pdf)
Quantitative Polyoma BKV by PCR - Plasma BKVPCR UWHC Open requisition form (pdf)
Quantitative Polyoma BKV by PCR - Urine BKPCR UWHC Open requisition form (pdf)
Qualitative VZV by PCR VZVPCR UWHC Open requisition form (pdf)
Qualitative EBV
Bacterial ID by 16s BID16S UWHC Open requisition form (pdf)
Qualitative EBV by PCR - BAL EBVBAL UWHC Open requisition form (pdf)
Quantitative EBV by PCR - Blood EBVDNA UWHC Open requisition form (pdf)
Qualitative EBV by PCR - Body Fluid BEBV UWHC Open requisition form (pdf)
Qualitative EBV by PCR - CSF CFEBV UWHC Open requisition form (pdf)
Qualitative EBV by PCR - Tissue EBVT UWHC Open requisition form (pdf)
Qualitative HPV 16,18/45 Genotyping HPVGEN UWHC Open requisition form (pdf)
Qualitative HPV High Risk HPVDNA UWHC Open requisition form (pdf)